Nucleation of crystals
I study how crystals start to form, which
is as a microscopic crystallite
(to the left is a microscopic crystallite)
that then goes
on to grow into a large crystal like a snow flake, or a salt
crystal.
The most recent thing I have worked on is looking
at how the rate at which crystals form (nucleate) can
vary by orders of magnitude due to hidden differences between
one crystallising droplet or air sample, and another.
See my
LabTalk article on a recent
paper of mine.
I am also interested in how defects in the crystal lattice
affect how crystals start to form - it is well known that
defects affect growth but apart from some work by my
now-ex PhD student Amanda Page, there is very little work
on the effect of defects on how crystallisation starts.
However, as we can see above, quite complex patterns of defects can appear even
in microscopic crystallites.
In the snapshot above colours denote different local
ordering of each (Lennard-Jones model) atom. Yellow denotes
that the atom is a local
face-centered crystalline (fcc) environment, and blue is hexagonal
close-packed. Thus if the crystal was, for example,
a defect free pure
fcc it would be completely yellow.
It is not. Although it has yellow fcc domains they
are split by what are called stacking faults - which
show up as planes of locally blue (hcp) atoms.
There are also atoms with local five-fold symmetry (grey) - a symmetry that
is forbidden in large crystals.
See here
for a 3D interactive view of the snapshot.
I also have interests in heterogeneous nucleation, and the nucleation
of competing polymorphs. I recently got an EPSRC grant, to see the research I proposed
doing with the postdoc, see the
Case for Support
that was funded.
I have a review on the nucleation
of crystals coming out very soon.
It focuses on reviewing systems where classical nucleation
theory may be inadequate. Preprint
pdf here.
Biological physics
My biological physics research both tries to answer fundamental questions about how cells function
and tries to understand specific systems, in collaboration with experimentalists.
In practice there is no sharp divide between the two, recent work with experimentalists has found that
a protein of medical interest diffuses surprisingly rapidly given its large size.
This finding raises the question of how our cells have evolved to allow proteins to move rapidly
around inside them -- many proteins need to move from A to B inside our cells to perform their function.
The images just above are from an experiment by Berni Schmierer (then working at the Cancer Research labs
in London)
on a protein called Smad2.
The protein Smad2 acts to control specific genes and
to do that it has to basically move around the nucleus until it finds them.
The bright ovals
are the nuclei of cells and they are bright as they contain high concentrations of a fusion protein of Smad2 and GFP - GFP
fluoresces which is why the cells are bright.
The 3 images are of the same nucleus at 3 different times; earliest on the left.
Berni bleached a strip (middle image) and then watched diffusion of Smad2-GFP
within the nucleus restore the fluorescence unifomity in the nucleus (right-hand image).
The rate at which the fluorescence in the bleached
strip returns allows us to estimate how fast Smad2 moves in the nucleus. The scale bar is 10 micrometres.
Selected recent papers
94. A. J. Page and R. P. Sear,
Crystallisation controlled by the geometry of a surface,
Journal of the American Chemical Society 131,
17550-17551 (2009).
(pdf).
Supporting Information (including
two movies of nucleation).
98. J. A. van Meel,
R. P. Sear and D. Frenkel,
Design principles for broad-spectrum protein-crystal nucleants with
nanoscale pits,
Physical Review Letters 105, 205501 (2010).
(pdf)
Copyright (2010) APS. This may only be downloaded for personal use.
Other use requires prior permission by APS.
99. V. Gonzalez-Perez, B. Schmierer, C. S. Hill
and R. P. Sear,
Testing Smad2 intranuclear dynamics by mathematical modelling of
FRAP experiments,
Integrative Biology 3, 197-207 (2011).
(pdf)
100.C. A. Che Abdullah, P. Asanithi, E. W. Brunner,
I. Jurewicz, C. Bo, C. Lewis Azad, R. Ovalle-Robles, S. Fang,
M. D. Lima, X. Lepro, S. Collins, R. H. Baughman, R. P. Sear
and A. B. Dalton,
Aligned, Isotropic and Patterned Carbon Nanotube Substrates that
Control the Growth and Alignment of Chinese Hamster Ovary Cells,
Nanotechnology 22, 205102 (2011).
(pdf)